PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00042.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 286aa    MW: 32778.9 Da    PI: 7.3832
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00042.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1691.5e-5281371128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                              lppGfrFhPtdeel+ +yL +kveg ++el evi+ +d+yk++Pw+Lp k  + +++ ew+fF++rdkky++g+r+nratk+gyWk
  Rsa1.0_00042.1_g00003.1   8 LPPGFRFHPTDEELIGYYLSRKVEGLEIEL-EVIPVIDLYKFDPWELPdKsFLPNRDMEWFFFCPRDKKYPNGSRTNRATKAGYWK 92 
                              79****************************.99**************96435556888**************************** PP

                      NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              atgkd+++++k +g+ +g +ktLvfy+grap g +t+W+mheyrl
  Rsa1.0_00042.1_g00003.1  93 ATGKDRKITCKsSGAITGYRKTLVFYEGRAPLGDRTSWFMHEYRL 137
                              *********99777889**************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-603161IPR003441NAC domain
PROSITE profilePS5100558.9918161IPR003441NAC domain
PfamPF023657.9E-299137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MQMGSSCLPP GFRFHPTDEE LIGYYLSRKV EGLEIELEVI PVIDLYKFDP WELPDKSFLP  60
NRDMEWFFFC PRDKKYPNGS RTNRATKAGY WKATGKDRKI TCKSSGAITG YRKTLVFYEG  120
RAPLGDRTSW FMHEYRLCDD DISQKSPNFK GAFVLCRVVK KNGLKTKNLK NKNEQAIGSG  180
CSSLATSPCR DETTQFQPFK PSLTTNESSS IWISPDYILD SSKDYPQIQE GAAIYLPNYH  240
FPVNGANHQM GFPESSHLNI DQSVQTGYWP NYEYDQTGSF DYSNLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-51816217166NO APICAL MERISTEM PROTEIN
1ut4_B2e-51816217166NO APICAL MERISTEM PROTEIN
1ut7_A2e-51816217166NO APICAL MERISTEM PROTEIN
1ut7_B2e-51816217166NO APICAL MERISTEM PROTEIN
4dul_A2e-51816217166NAC domain-containing protein 19
4dul_B2e-51816217166NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0218893e-83AL021889.2 Arabidopsis thaliana DNA chromosome 4, BAC clone T6K21 (ESSA project).
GenBankAL1615473e-83AL161547.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 47.
GenBankCP0026873e-83CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596725.10.0PREDICTED: NAC domain-containing protein 86
RefseqXP_013705749.10.0PREDICTED: NAC domain-containing protein 86-like
SwissprotQ9FFI56e-69NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A078EPR80.0A0A078EPR8_BRANA; BnaC07g34980D protein
TrEMBLA0A0D3DER50.0A0A0D3DER5_BRAOL; Uncharacterized protein
STRINGBra012626.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21512777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-150NAC domain containing protein 71